AOBPreview originally published online on February 7, 2006
Annals of Botany 2006 97(4):479-495; doi:10.1093/aob/mcl006
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INVITED REVIEW |
Regulation of Sulfate Assimilation in Arabidopsis and Beyond
John Innes Centre, Norwich NR4 7UH, UK
* For correspondence. E-mail stanislav.kopriva{at}bbsrc.ac.uk
Received: 10 October 2005 Returned for revision: 11 November 2005 Accepted: 23 November 2005 Published electronically: 7 February 2006
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ABSTRACT |
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TOP
ABSTRACT
INTRODUCTION• Background and Aims Sulfate assimilation is a pathway used by prokaryotes, fungi and photosynthetic organisms to convert inorganic sulfate to sulfide, which is further incorporated into carbon skeletons of amino acids to form cysteine or homocysteine. The pathway is highly regulated in a demand-driven manner; however, this regulation is not necessarily identical in various plant species. Therefore, our knowledge of the regulation of sulfate assimilation is reviewed here in detail with emphasis on different plant species.
• Scope Although demand-driven control plays an essential role in regulation of sulfate assimilation in all plants, the molecular mechanisms of the regulation and the effects of various treatments on the individual enzymes and metabolites are often different. This review summarizes (1) the molecular regulation of sulfate assimilation in Arabidopsis thaliana, especially recent data derived from platform technologies and functional genomics, (2) the co-ordination of sulfate, nitrate and carbon assimilations in Lemna minor, (3) the role of sulfate assimilation and glutathione in plant–Rhizobia symbiosis, (4) the cell-specific distribution of sulfate reduction and glutathione synthesis in C4 plants, (5) the regulation of glutathione biosynthesis in poplar, (6) the knock-out of the adenosine 5'phosphosulfate reductase gene in Physcomitrella patens and identification of 3'-phosphoadenosyl 5'-phosphosulfate reductase in plants, and (7) the sulfur sensing mechanism in green algae.
• Conclusions As the molecular mechanisms of regulation of the sulfate assimilation pathway are not known, the role of Arabidopsis as a model plant will be further strengthened. However, this review demonstrates that investigations of other plant species will still be necessary to address specific questions of regulation of sulfur nutrition.
Key words: Sulfate assimilation, plant nutrition, glutathione, cysteine, C4 photosynthesis, Arabidopsis thaliana, Physcomitrella patens, poplar, Lemna minor
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INTRODUCTION |
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Sulfur is found in nature in different oxidation states in inorganic, organic and bioorganic forms. For living organisms sulfur is an essential element with many different functions. It is found in reduced form in amino acids, peptides and proteins, in iron–sulfur clusters, lipoic acid and other co-factors, and in oxidized form as sulfonate group modifying proteins, polysaccharides and lipids. In addition, reduced sulfur compounds, such as hydrogen sulfide, serve as electron donors for chemotrophic or phototrophic growth in a large and diverse group of bacteria and archae, including purple and green sulfur bacteria (Trüper and Fischer, 1982
). By contrast, oxidized sulfur compounds such as sulfate can function as terminal electron acceptor in respiration to support growth of sulfate-reducing bacteria (Postgate, 1984). Plants, yeast and most prokaryotes cover their demand for reduced sulfur by reduction of inorganic sulfate to sulfide, which is then incorporated into organic compounds. Sulfur is the least abundant of the six macronutrients required by plants, and perhaps therefore its metabolism has been least studied. In the last decade, however, significant progress in understanding the pathway of sulfate assimilation in plants has been made, and has been summarized in several reviews (Hawkesford and Wray, 2000; Leustek et al., 2000; Kopriva and Koprivova, 2004; Kopriva and Rennenberg, 2004; Saito, 2004). A combination of biochemical and molecular methods have revealed that adenosine 5'phosphosulfate reductase is the key enzyme of this pathway (Koprivova et al., 2000; Suter et al., 2000; Bick et al., 2001; Tsakraklides et al., 2002; Vauclare et al., 2002). Recently, a combination of transcriptome and metabolome analyses has significantly increased our knowledge of the cellular processes affected by sulfur starvation, which is becoming a serious problem in agriculture (Hirai et al., 2003, 2004, 2005; Maruyama-Nakashita et al., 2003; Nikiforova et al., 2003, 2005). Furthermore, the first reports on molecular mechanisms of regulation of sulfate uptake and assimilation have emerged very recently, opening a new era of our understanding of the pathway (Maruyama-Nakashita et al., 2004, 2005). These new developments were enabled by the availability of numerous platform resources for the model plant Arabidopsis thaliana. However, it is also becoming increasingly apparent that not all biological questions on sulfur metabolism can be addressed in Arabidopsis and that not all knowledge gained on this model is transferable to other species. In this review, therefore, the newest developments in the field of plant sulfur nutrition will be summarized with special emphasis on choice of different plant species for particular experiments and on differences in regulation of the pathway in different plants. |
PLANT SULFUR ASSIMILATION |
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The major source of sulfur for plants is inorganic sulfate, although they are also able to use reduced sulfur compounds from the atmosphere, such as sulfur dioxide or hydrogen sulfide (Leustek et al., 2000
). Sulfate is taken up and distributed within cells and the plant as a whole by sulfate transporters. Plants possess multiple sulfate transporters with different properties and functions (reviewed in Buchner et al., 2004). The first plant sulfate transporters were cloned from a tropical legume, Stylosanthes hamata, by Smith et al. (1995), who utilized functional complementation screening of a yeast sulfate transporter mutant. Arabidopsis possess 14 genes for sulfate transporters, divided into five groups according to sequence similarity and function. All these genes have significant sequence similarities with the originally identified cDNA clone, SHST1 (Smith et al., 1995). However, an exception appears with the group 5 members, which show limited sequence identity and structural similarity with the remaining sulfate transporter family members, and their transport activity has yet been unverified. High-affinity sulfate transporters, group 1, are responsible for uptake of sulfate from soil solution into the root cells (Shibagaki et al., 2002; Yoshimoto et al., 2002). Low-affinity transporters, group 2, are required for translocation of sulfate within the plant; therefore, they are localized in xylem parenchyma and phloem cells of roots and leaves (Takahashi et al., 2000). Group 4 transporters are localized in tonoplast and are responsible for sulfate efflux from the vacuole (Kataoka et al., 2004a). Very little is known about the function of sulfate transporters of groups 3 and 5, except a demonstrated ability of SULTR3;5 to increase the rate of root-to-shoot sulfate translocation in Arabidopsis (Kataoka et al., 2004b). Unexpectedly, group 3 sulfate transporter was identified as essential for nitrogen fixation in legume nodules (Krusell et al., 2005; see also below). The identity of the plastidic sulfate uptake system remains one of the greatest challenges for the sulfate transport community.
Intracellular sulfate is further metabolized into a large variety of primary and secondary metabolites. For assimilation into cysteine, sulfate has to be transported into plastids and activated by adenylation to adenosine 5' phosphosulfate (APS) in a reaction catalysed by ATP sulfurylase (ATPS; EC 2.7.7.4
[EC]
). APS is reduced to sulfite by APS reductase (APR; EC 1.8.4.9
[EC]
); the electrons are derived from glutathione. Sulfite is further reduced by a ferredoxin-dependent sulfite reductase (SiR; EC 1.8.7.1
[EC]
) to sulfide, which is incorporated by O-acetylserine (thiol)lyase (OASTL; 2.5.1.47
[EC]
) into the amino acid skeleton of O-acetylserine (OAS) to form cysteine. OAS is synthesized by acetylation of serine with acetyl-CoenzymeA catalysed by serine acetyltransferase (SAT; EC 2.3.1.30
[EC]
) (Leustek et al., 2000; Suter et al., 2000; Kopriva and Koprivova, 2003; Fig. 1). SAT and OASTL form a multi-enzyme complex of cysteine synthase (Hell et al., 2002). Cysteine can be directly incorporated into proteins or peptides, such as glutathione (GSH), the most abundant low-molecular-weight thiol with a plethora of functions in plant stress defence, redox regulation, and sulfur storage and transport. Alternatively, cysteine is further metabolized and serves as a donor of reduced sulfur for synthesis of methionine, iron–sulfur centres, and various coenzymes and secondary metabolites. An intermediate of the sulfate assimilation pathway, sulfite, is metabolized into sulfolipids, essential components of chloroplast membranes (Sanda et al., 2001). Whereas sulfate reduction is localized in plastids only, cysteine is synthesized in all three compartments capable of protein synthesis: plastids, mitochondria and the cytosol (Leustek et al., 2000).
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Sulfur is, however, also present in plant metabolites in the oxidized state as a sulfo-group modifying carbohydrates, proteins and many natural products. A large proportion of the known sulfated metabolites play various roles in plant defence against biotic and abiotic stress. A well-studied example of such compounds is glucosinolates, which participate in defence against herbivores and pathogens in Brassicales (Mikkelsen et al., 2002
). They are also responsible for taste and flavour of cruciferous vegetables, and some of their degradation products, isothiocyanates, possess an anti-cancer activity (Mithen, 2001; Fahey et al., 2001). Another large group of sulfated compounds important for medicine are sulfated flavonoids, present in more than 250 species of 32 families (Barron et al., 1988), where they are involved in detoxification of reactive oxygen species and regulation of plant growth (Varin et al., 1997). Several other sulfated compounds were shown to participate directly in plant defence against pathogens, such as a sulfated derivate of jasmonic acid identified in Arabidopsis (Gidda et al., 2003) or sulphated ß-1,3 glucan (Menard et al., 2004). The transfer of the sulfo-group, i.e. sulfation, is catalysed by sulfotransferases (SOT) (Klein and Papenbrock, 2004). The SOT reaction requires 3'-phosphoadenosyl 5'-phosphosulfate (PAPS) as the sulfate donor and a compound with a free hydroxyl group as an acceptor. Multiple SOT isoforms are found in higher eukaryots because of the structural diversity of the biological acceptors of the sulfate group (Klein and Papenbrock, 2004; Table 1). PAPS is synthesized by phosphorylation of APS by APS kinase (Fig. 1). APS thus can be withdrawn from the primary sulfate assimilation pathway in plastids. In addition, there seems to be a sulfation-dedicated PAPS synthesis in the cytosol, as ATPS and APS kinase activity are present both in plastids and in the cytosol, in contrast to APR and SiR, which are strictly plastidic (Leustek et al., 2000; Rotte and Leustek, 2000; Koprivova et al., 2001).
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Very recently, a further complexity was added to the sulfate assimilation pathway. First, sulfite oxidase, an enzyme oxidizing sulfite to sulfate, was detected in plants (Eilers et al., 2001
). This enzyme is responsible for catabolism of sulfur-containing metabolites in animal mitochondria (Kisker et al., 1997). In plants it is localized in peroxisomes, i.e. spatially separated from sulfate assimilation, but its function is not yet known (Nowak et al., 2004). Secondly, PAPS reductase, an enzyme reducing PAPS to sulfite in yeast, fungi and some enteric bacteria, was found in the moss Physcomitrella patens (Koprivova et al., 2002a; see also below). The greatest progress in understanding the regulation of sulfate assimilation has been achieved in Arabidopsis thaliana. This recent development is therefore summarized in the next section, before the species-specific variations of sulfur metabolism are discussed. |
SULFATE ASSIMILATION IN ARABIDOPSIS THALIANA |
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Arabidopsis thaliana became the model plant for studies of sulfur assimilation only recently, when the Arabidopsis sequencing project was initiated. This plant was long used predominantly for molecular cloning (Hell et al., 1994
; Leustek et al., 1994; Brühl et al., 1996; Gutierrez-Marcos et al., 1996; Setya et al., 1996; Noji et al., 1998). These experiments revealed a great complexity of the sulfate assimilation pathway in Arabidopsis. With the exception of SiR and the enzymes of GSH synthesis, all other enzymes were encoded by small gene families (Table 1). It is not yet clear whether this is a functional redundancy or if all genes have a specific function. The sulfate transporter family is the best understood in this respect (Takahashi et al., 2000; Shibagaki et al., 2002; Yoshimoto et al., 2002, 2003; Kataoka et al., 2004a, b). Each analysed isoform has a specific localization, affinity to sulfate or regulation, indicating different biological functions. Differences in subcellular localizations and in kinetic parameters were found also among the five members of the Arabidopsis SAT gene family (Kawashima et al., 2005); however, their different functions remain to be demonstrated in vivo, e.g. by analysis of knock-out lines. By contrast, very little is known about the individual members of the ATPS, APR and APS kinase families. In the case of ATPS, all four genes code for proteins with putative organelle targeting peptides, so that it is not known which isoform is responsible for the cytosolic ATPS activity. This contrasts with other plant species, e.g. rice or potato, for which a cytosolic and plastidic ATPS were clearly identified (Klonus et al., 1994; Table 1). GSH biosynthesis is also differently organized in Arabidopsis and other plant species. Whereas in Arabidopsis and possibly other Brassicales the first enzyme of GSH synthesis, 
-glutamylcysteine synthetase (-ECS), seems to be exclusively localized in plastids and the second one, GSH synthetase (GSHS), is dually targeted to plastids and the cytosol from a single gene (Wachter et al., 2005), other plant species contain multiple copies of both genes (Table 1) and possess -ECS activity also in the cytosol (Hell and Bergmann, 1990).
The availability of cDNA sequences allowed using Arabidopsis for investigation of regulation of sulfate metabolism at the molecular level. Many reports primarily addressed changes in accumulation of mRNA of sulfate assimilation genes; for example, Takahashi et al. (1997) showed that a low-affinity sulfate transporter, SULTR2;1, and one isoform of APR and SAT were strongly induced by 2 d of sulfate starvation, and Harada et al. (2000) demonstrated regulation of sulfate assimilation by jasmonate. However, it was also possible to conduct more complex studies of the level of enzyme activities, mRNA and protein accumulation, metabolites (Cys and GSH), and even fluxes through the pathway. The first among such studies was the investigation of the control of sulfate assimilation by light (Kopriva et al., 1999). APR activity was shown to undergo a diurnal rhythm with maximum activity 4 h after light onset and minimum activity at the beginning of the night. Furthermore, sucrose was able to mimic the effect of light, revealing an interaction of sulfate assimilation with carbon metabolism (Kopriva et al., 1999). Sulfate assimilation is also strongly interconnected with the assimilation of nitrogen (Reuveny et al., 1980; Brunold and Suter, 1984). In A. thaliana withdrawal of nitrogen from nutrition for 3 d led to a specific decrease of APR activity, whereas OASTL and thiol contents were not affected (Koprivova et al., 2000). In all these experiments, the changes in APR activity corresponded to changes in mRNA levels of all three APR isoforms and APR protein accumulation, showing that APR is primarily regulated on the level of transcription. In addition, however, Bick et al. (2001) revealed a further, post-translational level of APR regulation by redox processes. These and other experiments concentrated on APR, as this enzyme was long known to be strongly regulated by various environmental factors, nutrient availability and stress (Brunold, 1990). The finding that treatment of Arabidopsis root cultures with thiols reduced solely APR, but not ATPS, SiR or OASTL, enabled use of feeding experiments with 35
for control flux analysis to quantify the contribution of APR in the control of sulfate assimilation (Vauclare et al., 2002). Starting from internal sulfate the flux control coefficient of APR was calculated to be between 0·7 and 0·9 (equivalent to 70 and 90 % of the total control), indicating strong control of the pathway by APR. However, because sulfate uptake was even more inhibited by GSH than APS reduction, APR shares control of the flux with the sulfate uptake system. APR is thus indeed a key enzyme of the sulfate reduction pathway (Vauclare et al., 2002). This conclusion was further corroborated by Tsakraklides et al. (2002), who demonstrated that expression of bacterial APR in Arabidopsis results in deregulation of the pathway and accumulation of thiols and other reduced sulfur compounds, such as thiosulfate.
In the search for molecular mechanisms of regulation of sulfate assimilation, several potential signals were identified (Fig. 2). The most prominent signal is the precursor of cysteine, OAS. OAS has been identified as a limiting factor for cysteine synthesis (Rennenberg, 1983) and was shown to induce APR activity and rate of thiol synthesis in Lemna minor (Neuenschwander et al., 1991). In Arabidopsis, OAS induced mRNA accumulation of all genes of sulfate assimilation and dramatically increased flux through sulfate assimilation (Koprivova et al., 2000). OAS also strongly affects the cysteine synthase complex: even a less than two-fold increase in OAS concentration results in dissociation of the complex and inactivation of SAT (Berkowitz et al., 2002). Because OAS accumulates during sulfur deficiency, and because of its effects on cysteine synthase and expression of sulfate assimilation genes, OAS was proposed to act as a mediator of plant sulfur status (Hell et al., 2002). Accordingly, the activity of a ßSR S-responsive region of the ß-subunit of soybean conglycinin (Awazuhara et al., 2002) was up-regulated by OAS (Ohkama-Ohtsu et al., 2005). In the search for mutants with altered sulfur deficiency response using the ßSR-driven green fluorescent protein (GFP) expression as a tool, a mutant accumulating OAS was identified, again indicating OAS as a signal of sulfur deficiency (Ohkama-Ohtsu et al., 2005). This conclusion was further strengthened by a transcriptome analysis suggesting the role of OAS as general regulator of gene expression (Hirai et al., 2003). The mRNA levels of more than 850 genes were affected by treatment of Arabidopsis with 1 mM OAS for 48 h. However, the correlation of changes in expression levels after sulfur deficiency and OAS treatment was significant only in the leaves. Further analysis of metabolite-to-gene networks revealed that expression of several genes of sulfate assimilation, such as ATPS3, APR2 and 3, SULTR1;1, 1;2 and 2;1, was indeed tightly linked to OAS level (Hirai et al., 2005). Transcript levels of other genes also regulated by sulfur deficiency, such as SiR, APS kinase or group 3 sulfate transporters, by contrast, were not correlated with OAS, showing that OAS cannot be the sole sensor of sulfur deficiency (Hirai et al., 2005). It is thus evident that OAS is an important player in regulation of plant sulfur homeostasis but its exact molecular function and the other components of the regulatory circuit are unresolved.
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The general role of OAS as signal in the sulfur deficiency response was further questioned in experiments with potato, in which induction of sulfate uptake and mRNA levels of sulfate transporter and APR by sulfur starvation preceded accumulation of OAS (Hopkins et al., 2005
). Whether this is due to different regulatory circuits in Arabidopsis and potato remains to be elucidated. This explanation is possible, as it is not the first major variation to be described in the regulation of sulfur metabolism between the two species. The cystathionine -synthase (CgS), first step in synthesis of methionine from cysteine and O-phosphohomoserine, is strongly down-regulated by Met. In Arabidopsis this is achieved by S-adenosylmethionine-dependent degradation of CgS mRNA (Chiba et al., 2003). The CgS protein plays an important role in this autoregulation, as mto1 mutants accumulating Met and CgS transcript have alterations in amino acid sequence of the N-terminal part of the protein (Chiba et al., 1999). Met levels in Arabidopsis can be modulated by changes in CgS mRNA level using a transgenic approach (Hesse and Hoefgen, 2003). However, in potato, neither overexpression nor antisense downregulation of CgS affected Met levels (Kreft et al., 2003). In addition, potato CgS mRNA expressed in Arabidopsis does not undergo the same degradation as the endogenous transcript (Kreft et al., 2003). It is thus possible that different molecular mechanisms of regulation of sulfate assimilation exist in Arabidopsis and potato (and potentially in other plants) so that the knowledge obtained from the model species may not always be simply transferred to other, for example, crop species.
Another compound possibly regulating sulfate assimilation directly is glutathione (Fig. 2). Reduced forms of sulfur, such as H2S, cysteine or GSH, trigger a strong decrease in sulfate uptake and assimilation (Brunold and Schmidt, 1978; Lappartient et al., 1999; Westerman et al., 2001). In A. thaliana root cultures APR activity and transcript levels were decreased by feeding either cysteine or GSH (Vauclare et al., 2002). Because external GSH supply also increases the accumulation of cysteine, both Cys and GSH might be responsible for the control of uptake and assimilation. Blocking GSH synthesis by L-buthionine [S, R] sulfoximine, an inhibitor of -ECS, relieved the repression APR, indicating that GSH is most probably the acting molecular signal (Vauclare et al., 2002).
Carbohydrates induce APR mRNA accumulation and activity in the dark (Kopriva et al., 1999, 2002a; Hesse et al., 2003); the mechanism involved is, however, distinct from the carbohydrate regulation of the ADP-glucose pyrophosphorylase subunit ApL3 gene used to decipher sugar sensing in Arabidopsis (Rook et al., 2001; S. Kopriva, unpubl. res.).
Little is known about the role of phytohormones in the control of sulfur assimilation, but recent developments indicate that this group of compounds is very important for regulation of S nutrition (Ohkama et al., 2002; Maruyama-Nakashita et al., 2004, 2005). Ohkama et al. (2002) used transgenic Arabidopsis plants, expressing GFP under control of a chimeric promoter containing a sulfur responsive element of ß-conglycinin (Awazuhara et al., 2002), to test the influence of phytohormones on the sulfur deficiency response. Whereas abscisic acid (ABA), indole-3-acetic acid (IAA), aminocyclopropane carboxylic acid (ACC, precursor of ethylene), gibberelic acid (GA3) and jasmonic acid (JA) were not able to induce expression of GFP derived from the sulfur responsive element and, thus, mimic the sulfur starvation response, trans-zeatin caused an increase in GFP synthesis both in sulfur-sufficient and in sulfur-deficient conditions. In addition, zeatin treatment resulted in an increased accumulation of mRNA for APR and a low-affinity sulfate transporter (Ohkama et al., 2002). By contrast, cytokinins repressed the expression of high-affinity sulfate transporters and sulfate uptake capacity of Arabidopsis roots. The CRE1/WOL/AHK4 cytokinin receptor was found to be important for regulation given that the effect of cytokinins was attenuated in cre1-1 mutants (Maruyama-Nakashita et al., 2004). Cytokinins are known to be closely related to the nitrogen status of the plant and to be involved in regulation of nitrogen assimilation (Samuelson et al., 1995; Takei et al., 2001; Collier et al., 2003). Recently, they were shown to be involved also in regulation of phosphate uptake (Martin et al., 2000). It therefore seems likely that cytokinins may play a more general role in co-ordination of uptake and assimilation of nutrients, including sulfur.
Although auxin was not able to induce expression of GFP from the sulfur responsive element, its role in regulation of sulfur assimilation cannot be excluded. A NIT3 nitrilase, involved in synthesis of IAA, belongs to genes strongly induced by sulfur deficiency (Kutz et al., 2002). In addition, the cis-acting element conferring sulfur starvation response recently identified in Arabidopsis SULTR1;2 promoter contains an auxin response factor (ARF) binding sequence (Maruyama-Nakashita et al., 2005). In contrast to typical ARF sites the motif was found as a monomer in the sulfur responsive element and the promoter activity was not affected by naphthalene acetic acid (Maruyama-Nakashita et al., 2005). However, more information is needed to evaluate comprehensively the regulatory interactions of auxin with sulfur metabolism.
JA did not affect the expression of the sulfur responsive promotor element (Ohkama et al., 2002), but is nevertheless involved in regulation of sulfate assimilation. Treatment of Arabidopsis with methyljasmonate resulted in a fast but transient increase in mRNA levels of many genes involved in sulfate assimilation and GSH synthesis, but without affecting sulfur metabolite levels (Xiang and Oliver, 1998; Harada et al., 2000; Jost et al., 2005). The mRNA for sulfate transporters was not affected, confirming that JA does not participate in the regulation by sulfur nutrition although genes of jasmonate biosynthesis are among those induced by sulfur starvation (Hirai et al., 2003; Maruyama-Nakashita et al., 2003; Nikiforova et al., 2003). The induction of sulfate assimilation by JA is not surprising as JA is known to participate in the transduction of stress responses (Reymond and Farmer, 1998) and sulfur compounds often play an important role in plant stress defence (Foyer and Rennenberg, 2000).
The interaction of sulfate assimilation and GSH synthesis with stress defence is further corroborated by the finding that the level of GSH increased in plants treated with abscisic acid (Jiang and Zhang, 2001) and salicylic acid (SA) (Fodor et al., 1997). ABA plays an important role in adaptive responses to environmental stresses (Chandler and Robertson, 1994) and leads to increased production of reactive oxygen species (Guan et al., 2000). It is therefore not clear whether GSH synthesis is regulated by ABA itself or by the oxidative stress resulting from ABA treatment. Because ABA induces mRNA accumulation of cytosolic OASTL (Barroso et al., 1999) it seems that this compound may have a more profound effect on control of sulfur metabolism. SA plays a central role in plant defence against pathogens. SA accumulates upon pathogen attack, induces expression of pathogenesis-related genes and is a necessary component of systemic acquired resistance (Kunkel and Brooks, 2002). Treatment of tobacco leaves with SA as well as infection with tobacco mosaic virus resulted in an increase in GSH content in inoculated but not in systemic leaves (Fodor et al., 1997). In addition, treatment with the biologically active SA analogue 2,6-dichloroisonicotinic acid increased the GSH level leading to a reduction of NPR1, a regulator of systemic acquired resistance, and expression of the PR1 gene for a pathogenesis-related protein (Mou et al., 2003). SA was also implicated in the mechanism of nickel tolerance in hyperaccumulator Thlaspi species. Elevated SA levels engineered in Arabidopsis resulted in an increase in SAT activity and GSH content and, consequently, in increased tolerance to Ni (Freeman et al., 2005). Whether SA regulates the expression of ECS and GSHS, if and how it affects SAT, or if it utilizes another mechanism to increase GSH synthesis remain to be elucidated.
Arabidopsis is the plant model of choice for global investigations of transcriptome and metabolome. As the major physiological problem connected with sulfur metabolism is sulfur deficiency, the extent to which this condition affects plant metabolism was investigated by expression profiling (Hirai et al., 2003; Maruyama-Nakashita et al., 2003; Nikiforova et al., 2003) and combined transcriptome and metabolome analysis (Hirai et al., 2005; Nikiforova et al., 2005). More than 2700 genes were found to be affected by sulfur starvation. As expected, the genes induced by sulfur deficiency included those coding for sulfate transporters and APR; other genes of sulfate assimilation were not significantly and/or consistently affected. However, the genes involved in jasmonate and auxin biosynthesis were induced irrespective from the experimental set-up, as well as a gene for NADPH oxidoreductase, which is involved in oxidative stress defence. Several genes were strongly regulated in one experiment but not others. Examples of such genes are thioglucosidase, which was strongly induced in the roots after 24 h of sulfur deficiency (Maruyama-Nakashita et al., 2003) and was suggested to be involved in providing additional sulfur via degradation of glucosinolates (Wittstock and Halkier, 2002), or phenylalanine ammonia-lyase, strongly reduced after 6 and 10 d of sulfur starvation (Nikiforova et al., 2003). Metabolome analysis revealed that from approx. 6000 analysed metabolites, 11·5 % were significantly affected by 13 d of sulfur starvation (Nikiforova et al., 2005). Examples are tryptophan, concentration of which increased up to 28-fold, other amino acids and flavonoids, whereas levels of thiols, lipids and chlorophyll decreased (Nikiforova et al., 2005). The power of the global study of metabolite and transcript networks was demonstrated by Hirai et al. (2005), who used a batch-learning self-organizing mapping analysis to reveal clusters of genes and metabolites regulated by the same mechanism. This led, for example, to prediction of function of three sulfotransferase genes in glucosinolate metabolism that were confirmed after biochemical analysis of corresponding recombinant proteins. Altogether, transcriptome and metabolome analyses revealed the complexity of the interactions between S, N and C metabolism and opened new perspectives for dissecting the molecular mechanisms of regulation of sulfate assimilation. In this context, the finding of 49 transcription factor genes that specifically responded to sulfur deficiency is of greatest importance (Nikiforova et al., 2003).
Compared with the number for other metabolic pathways, only few recent reports have described the use of genetic approaches for studies of sulfate assimilation (Shibagaki et al., 2002; Ohkama-Ohtsu et al., 2005). Analysis of selenate-resistant mutants resulted in functional characterization of SULTR1;2 and its identification as the major uptake system for sulfate into the roots (Shibagaki et al., 2002). GFP expression from the well-characterized ßSR promoter fragment from conglycinin (Awazuhara et al., 2002) was used as a tool in the search for mutants with altered sulfur deficiency response. Seeds from plants harvesting the ßSR::GFP construct were mutagenized and mutants were selected with increased GFP expression at normal sulfur supply (Ohkama-Ohtsu et al., 2005). In one of these mutants, the level of OAS was increased and, in addition to GFP expression, the mRNA levels of several other genes responsive to sulfate starvation were increased even at normal sulfur concentration. Map-based cloning and sequence analysis identified a thiol reductase to be responsible for the elevated OAS levels (Ohkama-Ohtsu et al., 2005). This result, although not easy to interpret, indicates the power of the genetic approach, which allows identification of unexpected connections in plant metabolism. Surely, this approach, together with the use of other genetic resources, such as T-DNA or transposon mutants, will deliver the much needed identity of molecular signals and transcription factors regulating sulfur metabolism. Arabidopsis thaliana will certainly be the major player in this process.
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SULFATE ASSIMILATION IN LEMNA MINOR |
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Traditionally, the water plant Lemna minor was used as a model to study the regulation of sulfate assimilation in higher plants. The advantages of Lemna compared with other plant systems, such as tobacco cell cultures or spinach chloroplasts, were (1) the use of an intact plant, (2) direct contact of the fronds with nutrient solutions, (3) rapid increase in biomass and (4) the possibility of growth in aseptic liquid cultures under steady-state conditions. L. minor was used predominantly to decipher the regulation of sulfate assimilation by sulfur compounds (Brunold and Schmidt, 1978
; Brunold et al., 1987) and the co-ordination of sulfate reduction with the assimilation of nitrogen (Brunold and Suter, 1984; Suter et al., 1986). Sulfur deficiency induced activity of APR; other enzymes of the sulfate reduction pathway were much less influenced (Brunold et al., 1987). An increase in sulfate concentration in the nutrition or addition of cysteine or H2S led to decreased APR activity, but activity could be quickly re-established on a return to control conditions (Brunold and Schmidt, 1978; Brunold et al., 1987). The activities of ATPS and APR decreased under nitrogen-deficient conditions (Brunold and Suter, 1984). At the same time, addition of nitrate or ammonia to the medium quickly restored the activity of these two enzymes. By contrast, addition of ammonia or amino acids (Arg, Asn, Gln) to the nutrient solution caused a 50–110 % increase in extractable APR activity in Lemna (Brunold and Suter, 1984; Suter et al., 1986). Addition of ammonia increased the flux through the sulfate assimilation pathway, measured as incorporation of 35S in proteins after feeding [35S]sulfate (Brunold and Suter, 1984). Finally, APR was shown to be repressed by dark, a process attenuated by OAS (Neuenschwander et al., 1991). Addition of OAS also led to an increase in thiol concentration both in light and in dark and to an increased flux through the sulfate assimilation pathway. From these results, Neuenschwander et al. (1991) for the first time suggested a role for OAS in regulation of APR and sulfate assimilation.
Lemna proved to be useful also in molecular studies. The purification of plant APR was successful only from L. minor, which together with cloning the corresponding mRNA led to the conclusion that APS sulfotransferase and APS reductase are identical enzymes (Suter et al., 2000). In order to study the interconnection of sulfate, nitrogen and carbon assimilation, L. minor was used to analyse the effects of CO2 omission from the atmosphere and simultaneous application of alternative carbon sources on APR and nitrate reductase (NR) (Kopriva et al., 2002a). Incubation in a CO2-free atmosphere led to a severe decrease in APR and NR activities and mRNA levels, but Rubisco was not affected to any great degree. Simultaneous addition of sucrose prevented the reduction in enzyme activities but not in mRNA levels. OAS could also attenuate the effect of missing CO2 on APR, but did not affect NR. 35 feeding showed that withdrawal of CO2 severely inhibited sulfate uptake and the flux through the sulfate assimilation pathway. After re-supply of normal air or addition of sucrose, incorporation of 35S into proteins and glutathione greatly increased. OAS treatment resulted in high-level labelling of cysteine; incorporation of 35S in proteins and glutathione was increased to a much lower extent (Kopriva et al., 2002a). These results corroborated the close link between sulfate, nitrate and carbon assimilation and indicated that OAS might signal the plant N status towards S assimilation, but most probably not vice versa.
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SULFATE ASSIMILATION IN LEGUMES |
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Legumes are unique among plants because they are able to form symbiosis with rhizobial bacteria. These bacteria are able to reduce atmospheric nitrogen to ammonium, which is incorporated into carbohydrate skeletons provided by the plant to form amino acids (Udvardi and Day, 1997
). Infection of plants with Rhizobia causes development of nodules, where the bacteria in the cytoplasm of plant cells differentiate into bacteroids (Van Rhijn and Vanderleyden, 1995). Nodulation is very important for plant nitrogen nutrition, especially in soils with low nitrogen content. Sulfur and sulfur compounds were shown to play an important role in establishing the symbiosis and its function (Zhao et al., 1999; Frendo et al., 2005; Harrison et al., 2005; Krusell et al., 2005). Growth and nitrogen fixation of pea were greatly enhanced by providing additional sulfur to the soil (Zhao et al., 1999). Legumes are the only plant family with significant amounts of a GSH analogue homoglutathione, which contains a ß-alanine instead of glycine (Klapheck, 1988). Homoglutathione (hGSH) is synthesized by an hGSH synthase, which is distinct from GSHS. The presence of the two genes in legumes is the result of relatively recent gene duplication after divergence of the Fabales (Frendo et al., 2001). No functional differences between GSH and hGSH are apparent as GSH to hGSH ratios vary largely between different legume species (Matamoros et al., 1999). Nodules are organs with the highest GSH and/or hGSH content in legumes because of their role in defence of the nitrogenase against reactive oxygen species (Matamoros et al., 2003). However, GSH and hGSH are important also for establishing the symbiosis. Reducing the tripeptide contents either by antisense expression of the corresponding biosynthetic genes or by inhibition of the GSH/hGSH synthetase with buthionine sulfoximine dramatically inhibited the formation of nodules (Frendo et al., 2005). In addition, the bacteria have a requirement for GSH. Sinorhizobium mutants in -ECS were not able to nodulate plant host whereas disruption of GSHS led to slow growth, delayed and deformed development of nodules, and a reduced capacity to fix nitrogen (Harrison et al., 2005). By contrast, Rhizobium mutants unable to reduce sulfate and nitrate due to disruption of siroheme synthase and thus with non-functional sulfite and nitrite reductase were unable to grow in the soil but produced functional nodules (Tate et al., 1997). It therefore seems that Rhizobia are able to take up and utilize cysteine but not GSH.
The importance of sulfur for nodule function was further corroborated by analysis of Lotus sym mutants with non-functional nodules (Krusell et al., 2005). They cloned the gene responsible for the sym13 and sym81 mutations, which display nitrogen deficiency syndromes under symbiotic but not non-symbiotic growth conditions and form smaller nodules with reduced nitrogenase content and nitrogen fixing capacity. In both cases, an SST1 sulfate transporter was defective. SST1 is a group 3 sulfate transporter expressed in a nodule-specific manner and located in the symbiosome membrane (Krusell et al., 2005). Thus, interestingly, the first sulfate transporter with clearly a unique function is essential not for sulfur nutrition but for metabolism of nitrogen. However, the strong sym phenotype of the sst1 mutants is surprising as at least one additional sulfate transporter is expressed specifically in Lotus nodules (Colebatch et al., 2002). In addition, the reduction of total sulfur content of 20–25 % in the mutants compared with wild-type nodules can hardly explain the severe disruption in nitrogen fixation as plants can reduce sulfur content by up to 70 % without phenotypic changes (Nikiforova et al., 2003). The mechanism by which the loss of SST1 aborts nitrogen fixation thus needs to be addressed in more detail.
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SULFATE ASSIMILATION IN C4 PLANTS |
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An interesting variation in sulfate assimilation was observed in plants with C4 photosynthesis (reviewed in Kopriva and Koprivova, 2005
). C4 photosynthesis is characterized by spatial separation of a primary CO2 fixation step into C4 acids from their decarboxylation and refixation of the released CO2 by Rubisco. This separation of the photosynthetic reactions is usually linked with occurrence of two distinct cell types: the bundle sheath cells (BSCs) and mesophyll cells (MCs) arranged around vascular tissue in a radial pattern known as Kranz anatomy (Laetsch, 1974). CO2 is initially fixed by phosphoenolpyruvate carboxylase (PEPCase) in the MCs to form a C4 compound oxaloacetate, which is subsequently converted to malate and/or aspartate. These C4 acids diffuse to BSCs, where they become decarboxylated and the released CO2 is refixed by Rubisco in the Calvin cycle, as in C3 plants (Edwards and Huber, 1981; Hatch, 1987). The CO2 concentration is therefore increased at the site of its photosynthetic fixation and thus eliminates the oxygenation reaction of Rubisco and photorespiration. A characteristic feature of C4 plants is a cell-specific localization of many enzymes of primary metabolism in BSCs or MCs. Clearly, the enzymes involved in the primary CO2 fixation and malate and/or aspartate synthesis, such as cytosolic carbonic anhydrase, PEPCase, pyruvate phosphate dikinase and NADP-malate dehydrogenase, are localized predominantly or exclusively in the MCs, whereas NAD(P)-malic enzyme, Rubisco, Rubisco activase and some enzymes of the Calvin cycle are found exclusively in BSCs (reviewed in Sheen, 1999; Edwards et al., 2001). In addition, glycine decarboxylase, a key enzyme of photorespiration, is localized exclusively in BSCs of C4 and C3–C4 intermediate plants (Hylton et al., 1988). C3–C4 intermediate plants were originally identified by having a CO2 compensation point intermediate between that of C3 and C4 species and can be considered as evolutionary intermediates in the path from C3 to C4 photosynthesis (Monson and Moore, 1989; Kopriva et al., 1996). Interestingly, enzymes participating in the assimilation of nitrogen are also localized in a cell-specific manner in various C4 plants; nitrate reductase and nitrite reductase are specifically localized in MCs, whereas glutamine synthetase is equally distributed between MCs and BSCs, and glutamate synthetase and glutamate dehydrogenase are predominantly but not exclusively localized within BSCs (Rathnam and Edwards, 1976; Moore and Black, 1979).
Given the number of cellular processes spatially distributed in C4 plants, it was not a great surprise that also enzymes of sulfate assimilation were found to be differentially localized (Gerwick and Black, 1979; Gerwick et al., 1980; Passera and Ghisi, 1982; Schmutz and Brunold, 1984). Several groups reported that 75–100 % of total leaf ATP sulfurylase activity in maize was confined to BSCs (Gerwick and Black, 1979; Passera and Ghisi, 1982; Burnell, 1984; Schmutz and Brunold, 1984). These findings were extended to 17 other C4 species, in which 95–100 % of total leaf ATPS activity was found in chloroplasts of BScs (Gerwick et al., 1980). In addition, APR activity was found almost exclusively in BSCs of maize (Schmutz and Brunold, 1984; Burgener et al., 1998), whereas activities of SiR and OASTL were found in MCs and BSCs at comparable levels (Passera and Ghisi, 1982; Burnell, 1984; Schmutz and Brunold, 1985). The mRNA for APR, ATPS and SiR accumulated in BSCs only, whereas OASTL transcript was detected in both MCs and BSCs (Kopriva et al., 2001).
Not only sulfate assimilation but also the synthesis and reduction of glutathione seem to be differently localized in C4 plants than in, for example, Arabidopsis. GSH is particularly important in maize and other low-temperature-sensitive C4 plants, because it protects against chilling stress by detoxification of H2O2. The oxidized glutathione (GSSG) formed in this reaction is subsequently reduced by NADPH-dependent glutathione reductase (GR). At low temperature, GSH content and reduction state are higher in chilling-tolerant genotypes of maize than in chilling-sensitive genotypes (Kocsy et al., 1996). When GSH content was increased in chilling-sensitive maize by treatment with herbicide safeners, chilling-induced injury was significantly reduced (Kocsy et al., 2001), whereas reduction of GSH by inhibiting its synthesis in a chilling-tolerant genotype resulted in increased leaf injury at low temperature (Kocsy et al., 2000). Consequently, in maize chilling induces foliar thiol levels and activities of APR, -ECS and GSHS (Brunner et al., 1995), and total GSH content and the activities of APR and GR are increased in chilling-tolerant maize compared with a sensitive genotype even at standard growth conditions (Kocsy et al., 1997). Although GSH is essential for protection against chilling injury and other stress, it is not equally distributed between MCs and BSCs in maize. GSHS activity is greater in MCs than in BSCs, leading to GSH synthesis predominantly in the MCs (Burgener et al., 1998) and higher GSH levels in this cell type (Doulis et al., 1997; Burgener et al., 1998; Kopriva et al., 2001). Cysteine was shown to be exported from BSC protoplast as a transport form of reduced sulfur to the MCs (Burgener et al., 1998; Fig. 3). The enzymes of GSH synthesis and corresponding mRNAs were, however, found to be localized in both MCs and BSCs by immunohistochemistry (Gómez et al., 2004). Both enzymes were detected in chloroplasts and in the cytosol (Gómez et al., 2004); this contrasts with results for the Brassicaceae, where -ECS is localized in plastids and GSHS is prevalently cytosolic (Wachter et al., 2005). Probably as a result of the low capacity for NADPH formation in BSCs, GR was found exclusively in MCs of maize (Doulis et al., 1997; Pastori et al., 2000). These results thus demonstrate that there are species-specific differences in the intercellular localization of GSH biosynthetic enzymes, which are dependent on increased capacity for transport of various sulfur compounds and possibly result in different regulatory mechanisms for sulfur assimilation in C4 plants.
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Most results on the regulation of sulfate assimilation obtained with maize fitted well to the general hypothesis of demand-driven control of the pathway (Lappartient and Touraine, 1996
). A co-ordinate increase in mRNA levels for sulfate transporters, ATPS and APR was observed in maize roots and leaves upon sulfate starvation (Bolchi et al., 1999; Hopkins et al., 2004) and the ATPS mRNA level was repressed in the presence of reduced sulfur compounds (Bolchi et al., 1999). Accordingly, ATPS and APR activities were increased upon treatments of maize with cadmium or chilling, which resulted in higher demand for reduced sulfur (Nussbaum et al., 1988; Brunner et al., 1995). In these and other reports the regulation of sulfate assimilation in maize was not distinguishable from that in other plants. Bolchi et al. (1999), however, described an interesting result which differentiates maize from other plant species analysed to date. Whereas in Brassicaceae GSH exerts the feedback repression of sulfate assimilation (Lappartient and Touraine, 1996; Vauclare et al., 2002), in maize cysteine is acting directly without conversion to GSH (Bolchi et al., 1999). This variation might well be a consequence of the BSC localization of sulfate assimilation (discussed in Kopriva and Koprivova, 2005).
Because the biological significance of the cell-specific distribution of sulfate assimilation and GSH synthesis is not known, the evolution of this trait is of particular interest. To address the question of whether the BSC localization of sulfate assimilation was a prerequisite or a consequence of C4 photosynthesis, the distribution of APR was studied in Flaveria species with different types of photosynthesis (Koprivova et al., 2001). The dicot genus Flaveria (Flaveriinae—Asteraceae) is an excellent model to study the evolution of C4 photosynthesis because, in addition to C3 and C4 species, a relatively large number of C3–C4 intermediates occur in this genus (Ku et al., 1991) and a continuous gradation both in the physiology and the biochemistry of photosynthesis exists among Flaveria species (Monson and Moore, 1989). APR activity, and cysteine and glutathione levels were significantly higher in C4-like and C4 species than in C3 and C3–C4 species. However, surprisingly, by northern analysis of cell-specific RNA and in situ hybridization ATPS and APR mRNA were present at comparable levels in both MCs and BSCs of the C4 species Flaveria trinervia. In addition, immunogold electron microscopy confirmed the presence of APR protein in chloroplasts of both cell types (Koprivova et al., 2001). Apparently, the localization of assimilatory sulfate reduction in the BSCs is not ubiquitous among C4 plants but occurs most probably only in C4 monocots and is, therefore, neither a prerequisite nor a consequence of C4 photosynthesis. The finding of different compartmentation of ATPS and APR in maize and Flaveria clearly revealed the dangers involved in generalization, and that species-specific variations in regulation and compartmentation might be far greater than are usually assumed.
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SULFATE ASSIMILATION IN TREES |
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