AOBPreview originally published online on June 1, 2006
Annals of Botany 2006 98(2):279-288; doi:10.1093/aob/mcl107
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INVITED REVIEW |
Could Heat Shock Transcription Factors Function as Hydrogen Peroxide Sensors in Plants?
Department of Biochemistry and Molecular Biology, University of Nevada, Mail Stop 200, Reno, NV 89557, USA
* For correspondence. E-mail ronm{at}unr.edu
Received: 21 December 2005 Returned for revision: 6 February 2006 Accepted: 2 March 2006 Published electronically: 1 June 2006
| ABSTRACT |
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Background Heat shock transcription factors (Hsfs) are modular transcription factors encoded by a large gene family in plants. They bind to the consensus sequence nGAAnnTCCn found in the promoters of many defence genes, and are thought to function as a highly redundant and flexible gene network that controls the response of plants to different environmental stress conditions, including biotic and abiotic stresses. Hsf proteins encoded by different genes exhibit a high degree of complexity in their interactions. They can potentially bind and activate their own promoters, as well as the promoters of other members of their gene family, and they can form homo- or heterotrimers resulting in altered nuclear localization, as well as enhanced or suppressed transcription.
Scope In this review, we summarize recent studies on Hsf function in Arabidopsis and tomato and present evidence obtained from microarray expression studies in Arabidopsis that the Hsf gene network is highly flexible and specialized, with specific members and/or member combinations controlling the response of plants to particular stress conditions. In addition, we describe recent studies that support the hypothesis that certain Hsfs function as molecular sensors that directly sense reactive oxygen species (ROS) and control the expression of oxidative stress response genes during oxidative stress.
Key words: Heat shock transcription factors (Hsfs), reactive oxygen species (ROS), abiotic stress, gene network, sensor
| INTRODUCTION |
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The heat shock (HS) response is a highly conserved response, characterized by rapid induction of heat shock proteins (HSPs) that primarily function as molecular chaperones to ensure the correct function of many cellular proteins under conditions of elevated temperature. The HS response was shown to be controlled by heat shock transcription factors (Hsfs) that act by binding to the highly conserved heat shock element (HSE; a palindromic motif of nGAAn) in the promoters of target genes. A key step in the activation process of Hsfs, in response to different stress conditions, involves the formation of homotrimers with high affinity for the HSE. In addition to mediating a relatively large part of the defence response of eukaryotes to heat stress, Hsfs are also thought to be involved in different pathological conditions, cellular responses to oxidative stress, heavy metals, amino acid analogues and metabolic inhibitors, and certain developmental and differentiation processes (Sorger and Pelham, 1988
An intimate relationship appears to exist between oxidative stress and the HS response (Liu and Thiele, 1996
; McDuffe et al., 1997; Ahn and Thiele, 2003
). When the HS response was first identified in Drosophila by Ritossa et al. in 1962, it was also shown to be induced during recovery from anoxia, which results in oxidative stress. Heat stress was shown to cause impairments in mitochondrial functions that result in the induction of oxidative damage (Davidson and Schiestl, 2001
; Larkindale and Knight 2002
; Vacca et al., 2004
). In plants, the steady-state transcript and protein level of many reactive oxygen species (ROS)-scavenging enzymes was found to be elevated by heat stress (Rainwater et al., 1996
; Sato et al., 2001
; Rizhsky et al., 2002
; Mittler et al., 2004
; Vacca et al., 2004
). In addition, acquired thermotolerance, i.e. the ability of plants to develop heat tolerance following a mild heat pre-treatment, was shown to be mediated in part by enhancing cellular mechanisms that prevented oxidative damage under heat stress (Bergmüller et al., 2003
; Larkindale and Huang, 2004
). HS leading to programmed cell death in plants was also shown to be associated with an enhanced production of ROS and the activation of the oxidative burst (Vacca et al., 2004
). The intimate relationship between the HS and oxidative stress responses, the activation of Hsfs during these processes, and recent genetic and biochemical studies (described below) suggest that Hsfs might function as direct sensors of hydrogen peroxide in plants. In this review, we will summarize evidence supporting this hypothesis, as well as propose a model for the function of the Hsf network in plants.
| EUKARYOTIC HSF GENES |
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Yeast and Drosophila contain only one Hsf gene, while vertebrates have four Hsfs. In contrast, plants show a much higher complexity, with Hsf genes comprising whole networks of approx. 18 (tomato) to 34 (soybean) Hsf genes (Nover et al., 1996
The model plant Arabidopsis thaliana contains 21 Hsf genes, as well as several genes encoding Hsf-like proteins. More than 16 Hsf genes are found in tomato, and many other Hsf genes were identified in rice, maize and other species. Plant Hsf genes were assigned to three different classes (classes A, B and C) according to their unique structural characteristics (Nover et al., 2001
). Class A HSF proteins comprise the largest group of Hsfs with 15 proteins in Arabidopsis. They contain an activation domain at the C-terminus and are thought to be involved in transcriptional activation. Class B and class C Hsfs lack a defined aromatic/hydrophobic/acidic (AHA)-type activation domain. The absence of an activation domain, as well as their inability to rescue the yeast Hsf1 mutation, has led to the assumption that class B Hsfs function as repressors (Boscheinen et al., 1997
; Czarnecka-Verner et al., 2000
, 2004). However, HsfB1 was recently demonstrated to function as a novel co-regulator of the tomato HsfA1 or HsfA2 enhancing their transcriptional activity (Bharti et al., 2004
).
| HSF STRUCTURE |
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Hsfs have a modular structure, conserved among eukaryotes (Fig. 1). All Hsfs contain a DNA-binding domain (DBD), an oligomerization domain, a nuclear localization sequence (NLS) and in most cases a nuclear export sequence (NES) (Nover et al., 1996
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The three classes of plant Hsf genes were defined based on peculiarities in the flexible linker and the HR-A/B domains (Nover et al., 2001
| THE PLANT HSF NETWORK |
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The number of plant Hsfs continues to grow. A new signature domain of the CTAD containing the AHA and NES motifs of plants allowed the identification of >60 new class A Hsfs from expressed sequence tag (EST) databases, including 19 new Hsfs in soybean (34 in total) and at least 23 Hsfs in rice (Kotak et al., 2004
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The best-studied plant Hsf system is that of tomato (Lycopersicon peruvianum). The tomato HsfA1, a constitutively expressed Hsf, is the master regulator of the heat response and is essential for thermotolerance (Mishra et al., 2002
In Arabidopsis, in contrast to tomato, no AtHsf master regulator could be identified. The Arabidopsis loss-of-function mutants AthsfA1a and AthsfA1b alone had no obvious effects on the HS response, only the AthsfA1a/1b double mutant was impaired in HS gene expression, showing lower transcript levels of HSPs at early stages of the HS response (Lohmann et al., 2004
; Busch et al., 2005
). The lack of a strong negative effect of the double mutant might suggest that in Arabidopsis other Hsf proteins can compensate for AtHsfA1a and AtHsfA1b; however, there was no increase in the expression of any of the other 13 class A Hsf genes in the AtHsfA1a/1b double mutant. These results show that AtHsfA1a and AtHsfA1b are necessary for early onset of HS gene expression at the transcriptional level, but they are not the sole regulators of the HS response in Arabidopsis (Lohmann et al., 2004
). Only a small fraction (4 %) of the HS-regulated genes were associated with AtHsfA1a/1b function (Busch et al., 2005
).
Figure 3 summarizes changes in the steady-state transcript level of different members of the Arabidopsis Hsf gene family in leaves of plants subjected to different abiotic stresses. The data presented in Fig. 3 reveal a high diversity in the response of different AtHsf genes to different abiotic stresses. Based on the data presented in Fig. 3, it is suggested that there is a high degree of specialization in the response of specific Hsfs to particular stress conditions. Thus, for example, AtHsfA9 appears to be specific to salt, drought and cold stress, while AtHsfA6a and AtHsfA6b appear to be cold and salt specific. With the exception of AtHsfA2 and AtHsfB1, the pattern of Hsf expression during heat stress was different from the pattern of Hsf expression during other stresses. Because HSEs are found in the promoters of many defence genes (e.g. Rizhsky et al., 2004a
), it is possible that different Hsfs, expressed during different stresses, activate or control different defence pathways. When the HSP response of plants subjected to drought, heat or drought combined with heat was compared, for example, it was found that all HSPs expressed during heat were also expressed during drought combined with heat and/or drought. However, leaves subjected to drought or drought combined with heat expressed specific HSPs not found in heat stress-treated leaves (Rizhsky et al., 2004b
). The combinatorial function of Hsfs could therefore be responsible for stress-specific expression of HSPs or other defence genes, and specific stress conditions could therefore cause activation of a particular set(s) of different Hsfs (Fig. 3; Rizhsky et al., 2004b
). Because most of the experiments presented in Fig. 3 include only a limited number of time points, the complete expression pattern of the Hsf network during different stress responses might not be captured by the figure. The data presented in Fig. 3 suggest that in addition to being potentially redundant, the Hsf gene network is highly flexible and specialized. It controls the response of plants to diverse stress conditions, as well as potentially their combination (Rizhsky et al., 2004b
; Mittler, 2006
).
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The promoters of all AtHsf genes contain clusters of HSEs (Nover et al., 2001
Functional interdependence studies between Hsfs, co-immunoprecipitation and yeast one-hydrid assays suggest that all class A LpHsfs can interact with each other, potentially forming hetero-oligomers (Scharf et al., 1998
; Bharti et al., 2000
). For example, the LpHsfA3 was isolated from a heat stress cDNA library by a two-hybrid screen using LpHsfA1 as a bait (Bharti et al., 2000
). Furthermore, different Hsfs can associate with each other potentially functioning as co-activators or co-repressors. According to an as yet unpublished observation reported by Baniwal et al. (2004)
, the tomato and Arabidopsis HsfA4a specifically interact with AtHsfA5 and function as co-repressors. In addition, the activity of AtHsfA4a was strongly repressed when co-expressed with AtHsfB1 (Czarnecka-Verner et al., 2000
). AtHsfB1 was later shown to repress the transcriptional activity of class A Hsfs through an active mechanism that involves its C-terminal regulatory region (Czarnecka-Verner et al., 2004
). In contrast, the tomato LpHsfB1 acts as a co-activator of class A LpHsfs. The co-activation of A-type LpHsfs by LpHsfB1 depends on a histone-fold-like motif in its C-terminal domain, which is required for the recruitment of the plant CREB-binding protein orthologue HAC1. The stimulation effect of LpHsfB1 was not restricted only to interaction with LpHsfA1, but could also be observed with LpHsfA2 (Bharti et al., 2004
). AtHsfB1 on the other hand, lacking the crucial lysine residue in the histone-fold motif, does not function as a co-activator and potentially even interferes with the activation of class A Hsfs via competition for HSE binding (Bharti et al., 2004
).
The complexity of the Hsf gene network of plants is evident at at least five different levels: (1) a large number of Hsf genes are present in the plant genome; (2) each Hsf gene can potentially bind to its own promoter, as well as to the promoters of all other Hsf genes; (3) monomers encoded by different Hsf genes can interact leading to activation or suppression of transcription; (4) monomers encoded by different Hsf genes can interact affecting nuclear targeting and retention; and (5) spatial and temporal expression patterns of Hsfs could affect different responses in different tissues. These features make the Hsf gene network a highly redundant and specialized network that functions in a stress- or developmental-specific manner.
| REDOX REGULATION OF HSFS IN EUKARYOTES |
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Considerable evidence supporting a possible role for plant Hsfs as direct sensors of ROS can be found in studies of mammalian, Drosophila and yeast Hsfs. In general, the transcriptional activation of Hsfs is achieved in two stages. First, inactive Hsf monomers form a homo-trimer upon receiving a stress signal. The DNA-binding trimer can then be modified further by phosphorylation, or subjected to conformational changes that activate transcription (Fig. 4; Larson et al., 1988
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In yeast, superoxide anions (O2) directly induced a conformational change in the Hsf DNA-binding trimer from its low-activity mode to a high-activity mode. The O2 signal was shown to be perceived by the region that links the DBD and the trimerization domains of the yeast Hsf, promoting the physical interaction of two DNA-bound homotrimers (Lee et al., 2000
| HSFS AND OXIDATIVE STRESS IN PLANTS |
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The promoter of the central H2O2-scavenging enzyme cytosolic ascorbate peroxidase 1 (Apx1), as well as the promoters of many defence genes and transcription factors involved in H2O2 signalling and defence, contain an Hsf-binding motif (Mittler and Zilinskas, 1992
ROS such as H2O2, O2 and 1O2 are thought to function as early signals for high light stress in plants (Pnueli et al., 2003
; Rizhsky et al., 2003
; Apel and Hirt, 2004
; Mittler et al., 2004
; Davletova et al., 2005a
). Accordingly, Arabidopsis mutants deficient in Apx1 accumulate higher levels of H2O2 compared with wild-type plants during light stress (Pnueli et al., 2003
; Davletova et al., 2005a
). Figure 5 compares the change in steady-state transcript level of all Arabidopsis Hsfs in wild-type and in knockout Apx1 (KO-Apx1) plants during light stress. The most dramatic difference was observed for AtHsfA4a and AtHsfA8 transcripts showing a constant higher level of expression in the Apx1 mutant (Davletova et al., 2005a
), while the expression pattern of other AtHsfs was only slightly affected or remained essentially unchanged in the absence of the Apx1 gene. The Hsfs whose transcripts transiently peaked during light stress in wild type as well as in the KO-Apx1 mutant are AtHsfs A2, A4a, A8, B1, B2b and C1 (Fig. 5). Of these, only AtHsfs A2, A4a, A8 and B1 showed elevated levels,
2-fold, during oxidative stress conditions, i.e. H2O2 or ozone or both (Fig. 3). HsfA2 increases approx. 50-fold under oxidative stresses, which suggest that its function might be important under these conditions; however, it did not increase in KO-Apx1 above its expression level in the wild type, suggesting that different AtHsfs might also respond differently to different types of oxidative stress, or to different levels of ROS. It could also be that the high level of expression of AtHsfA2 during oxidative stress conditions requires a transcriptional activator that is absent during light stress.
Thirty-two percent of the transcripts elevated in KO-Apx1 plants in response to a moderate light stress were also elevated in wild-type plants in response to H2O2 application (Davletova et al., 2005b
). HsfA4a and Zat12, as well as other genes that might be associated with H2O2 signalling, including NADPH oxidase (RbohD), MAPK3 and several WRKY transcription factors, were elevated under both conditions (Davletova et al., 2005b
). The zinc finger protein Zat12 is required for the expression of Apx1 during oxidative stress (Rizhsky et al., 2004a
; Davletova et al., 2005b
). Interestingly, a dominant negative construct for AtHsfA4a, when expressed in Arabidopsis, suppressed the expression of Zat12 and Apx1 during light stress (Davletova et al., 2005a
). This finding suggests that AtHsfA4a functions upstream of Zat12 and Apx1 (both containing an HSE element in their promoters; Rizhsky et al., 2004a
). Its rapid response to hydrogen peroxide stress, its control of Apx1 and Zat12 expression and its constitutive expression in cells in the absence of stress makes AtHsfA4a a prominent candidate to function as an Hsf H2O2 sensor in Arabidopsis. Furthermore, AtHsfA4a as well as AtHsfs A1a, A1b, A1d, A1e and A2 are evenly distributed in the cytoplasm and nucleus (Kotak et al., 2004
); this characteristic is highly important for the function of a sensor to detect changes in the cytosol and affect expression of the appropriate gene in the nuclei. In rice, HsfA4a is encoded by the Spl7 gene. A point mutation in Spl7 (tryptophan to arginine substitution in the DBD) caused a disease lesion mimics phenotype, which suggests a role for HsfA4a as an anti-apoptotic factor (Yamanouchi et al., 2002
). Overproduction of H2O2 and O2 is known to be associated with programmed cell death, causing lesion formation (Mittler et al., 1996
; Torres et al., 2002
; Vacca et al., 2004
), supporting the hypothesis that HsfA4a is a redox-sensitive hydrogen peroxide sensor in plants. Nevertheless, based on the microarray results presented in Fig. 5, HsfA8 might also function as a potential H2O2 sensor. Further work is of course required to determine whether Hsfs such as HsfA4a or HsfA8 function as ROS or redox sensors in plants.
| ACKNOWLEDGEMENTS |
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Work at the laboratory of R.M. is supported by funding from The National Science Foundation (NSF- 0431327; NSF-0420033) and The Nevada Agricultural Experimental Station (Publication number 03055517).
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